SIDISH.SIDISH
=============

.. currentmodule:: SIDISH

.. autoclass:: SIDISH

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~SIDISH.__init__
      ~SIDISH.analyze_perturbation_effects
      ~SIDISH.annotateCells
      ~SIDISH.getEmbedding_adata
      ~SIDISH.get_MarkerGenes
      ~SIDISH.get_embedding
      ~SIDISH.get_percentille
      ~SIDISH.init_Phase1
      ~SIDISH.init_Phase2
      ~SIDISH.plotUMAP
      ~SIDISH.plot_CellType_UMAP
      ~SIDISH.plot_HighRisk_UMAP
      ~SIDISH.plot_KM
      ~SIDISH.plot_double_Perturbation_Heatmap
      ~SIDISH.plot_perturbation_UMAP_default
      ~SIDISH.plot_perturbation_UMAP_differential
      ~SIDISH.plot_top_perturbed_genes
      ~SIDISH.reload
      ~SIDISH.run_Perturbation
      ~SIDISH.run_double_Perturbation
      ~SIDISH.run_double_Perturbation_score
      ~SIDISH.set_adata
      ~SIDISH.train